Soichi Hayashi

Publications

517 words3 min read#Publications

Selected work across neuroscience, astronomy, and distributed computing. Cited 800+ times (h-index 10) — the authoritative, always-current list is on my Google Scholar profile.

Journal articles

  • Hayashi, S., Caron, B.A., Heinsfeld, A.S. et al. “brainlife.io: a decentralized and open-source cloud platform to support neuroscience research.” Nature Methods 21, 809–813 (2024). doi:10.1038/s41592-024-02237-2
  • Levitas, D., Hayashi, S. et al. “ezBIDS: guided standardization of neuroimaging data interoperable with major data archives and platforms.” Scientific Data 11, 179 (2024). doi:10.1038/s41597-024-02959-0
  • Halchenko, Y. et al. “DataLad: a distributed system for joint management of code, data, and their relationship.” Journal of Open Source Software 6(63), 3262 (2021). doi:10.21105/joss.03262
  • Bertò, G. et al. “Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation.” NeuroImage (2020). doi:10.1016/j.neuroimage.2020.117402
  • Avesani, P. et al. “The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives, and reproducible open cloud services.” Scientific Data (2019). doi:10.1038/s41597-019-0073-y
  • Andrade, P. et al. “Distributed Monitoring Infrastructure for the Worldwide LHC Computing Grid.” J. Phys.: Conf. Ser. 396, 032002 (2012). doi:10.1088/1742-6596/396/3/032002
  • “Open Science Grid (OSG) Ticket Synchronization: Keeping Your Home Field Advantage in a Distributed Environment.” J. Phys.: Conf. Ser. 396(6), 062009 (2012). doi:10.1088/1742-6596/396/6/062009

Conference proceedings

  • “Scalable Quality Assurance for Neuroimaging (SQAN): automated quality control for medical imaging.” SPIE Medical Imaging 1131807 (2020). doi:10.1117/12.2549722
  • “Shape Analysis of White Matter Tracts via the Laplace–Beltrami Spectrum.” MICCAI, Granada, Spain (2018).
  • “ImageX: new and improved image explorer for astronomical images and beyond.” SPIE (2016). doi:10.1117/12.2233425
  • “Galaxy-based BLAST submission to Open Science Grid resources.” PoS (ISGC2014) 025.
  • Gopu, A., Hayashi, S. et al. “ODI — Portal, Pipeline, and Archive (ODI-PPA): a web-based astronomical compute archive, visualization, and analysis service.” SPIE 9152, article 9152-14 (2014).
  • Gopu, A., Hayashi, S., Young, M.D. “Image Explorer: Astronomical Image Analysis on an HTML5-based Web Application.” ADASS XXIII, ASP Conf. Ser. 485, p.417 (2014).
  • Young, M.D., Gopu, A., Hayashi, S. “Source Explorer: Towards Web Browser Based Tools for Astronomical Source Visualization and Analysis.” ASP Conf. Ser. 485, p.269 (2014).
  • Young, M.D., Gopu, A., Hayashi, S., Cox, J.A. “FRIAA: A Framework for Web-based Interactive Astronomy Analysis using AMQP Messaging.” ADASS XXII, ASP Conf. Ser. 475 (2012).
  • “MyOSG: a user-centric information resource for OSG infrastructure data sources.” SC-GCE (2009).

Presentations

  • “Orchestrating cloud networks for discoverable, accessible, interoperable, and reusable neuroscience.” OHBM 2019 — Neuroinformatics and Data Sharing.

Open-source software

Contributor to widely-used open-source neuroimaging tools, including nibabel, DIPY, fMRIPrep, and DataLad.